Services – ELIXIR-UK

PSIPRED

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Machine Learning Services Structural Bioinformatics

The PSIPRED Workbench is a Structural Bioinformatics service which offers a wide range of predictive methods to the bioscience community

PomBase

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Gene Ontology Microbial Genetics Model Organism Biology Services

PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation.

Phyre2

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Human Health Services Structural Bioinformatics

A server to predict protein structure from sequence with facilities for variant analysis and batch processing.

Pathogen Host Interactions Database

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Human Health Pathogen Biology Plant Biology Services

From mutant genes to phenotypes! The mission of PHI-base is to provide expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. Information is also given on the target sites of some anti-infective chemistries.

LIPID MAPS

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Human Health Interoperability and standards Services Structural Bioinformatics

LIPID MAPS® Lipidomics Gateway provide access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources, serving the international lipid research community.

Jalview

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Human Genomics Microbial Genetics Molecular Phylogenetics Pathogen Biology Plant Biology Services Structural Bioinformatics

Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. It allows viewing and editing of sequence alignments, their analysis with phylogenetic trees and Principal Components Analysis (PCA) plots and exploration of molecular structures and annotation. Jalview also allows integration of variant data from genome sequencing together with interactive analysis of DNA, RNA and protein sequences, phylogenetics and three-dimensional structures of macromolecules.

IUPHAR/BPS Guide to Pharmacology

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Human Health Services

The IUPHAR/BPS Guide to PHARMACOLOGY is an expert-curated resource of ligand-activity-target relationships, the majority of which come from high-quality pharmacological and medicinal chemistry literature. It is a freely available, searchable database of pharmacological information that includes quantitative data on drug targets and the prescription medicines and experimental drugs that act on them.

HGNC

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Gene Nomenclature Human Genomics Human Health Interoperability and standards Services

The HUGO Gene Nomenclature Committee is the only worldwide authority that assigns standardised nomenclature to human genes.

GWAS Central

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Human Genomics Human Health Services

The GWAS Central resource provides a toolkit for integrative access and visualisation of summary-level genome-wide association study data gathered from various public sources and submitted by GWAS authors, while ensuring safe open access to prevent research participant identification.

ENSEMBL Farmed and Domestic Animals

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Services

Ensembl is a genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.

PSIPRED

PomBase

Phyre2

Pathogen Host Interactions Database

LIPID MAPS

Jalview

IUPHAR/BPS Guide to Pharmacology

HGNC

GWAS Central

ENSEMBL Farmed and Domestic Animals

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