Structural Bioinformatics

PSIPRED

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Machine Learning Services Structural Bioinformatics

The PSIPRED Workbench is a Structural Bioinformatics service which offers a wide range of predictive methods to the bioscience community

Phyre2

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Human Health Services Structural Bioinformatics

A server to predict protein structure from sequence with facilities for variant analysis and batch processing.

LIPID MAPS

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Human Health Interoperability and standards Services Structural Bioinformatics

LIPID MAPS® Lipidomics Gateway provide access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources, serving the international lipid research community.

Jalview

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Human Genomics Microbial Genetics Molecular Phylogenetics Pathogen Biology Plant Biology Services Structural Bioinformatics

Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. It allows viewing and editing of sequence alignments, their analysis with phylogenetic trees and Principal Components Analysis (PCA) plots and exploration of molecular structures and annotation. Jalview also allows integration of variant data from genome sequencing together with interactive analysis of DNA, RNA and protein sequences, phylogenetics and three-dimensional structures of macromolecules.

DRASP: Dundee Resource for Sequence Analysis and Structure Prediction

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Data and tools Machine Learning Services Structural Bioinformatics

DRSASP's flagship services are the JPred4 webserver for protein secondary structure and solvent accessibility prediction and the JABAWS 2.2 webserver for multiple sequence alignment, disorder prediction, amino acid conservation calculations, and specificity‐determining site prediction. DRSASP resources are available through conventional web interfaces and APIs but are also integrated into the Jalview sequence analysis workbench, which enables the composition of multitool interactive workflows.

CATH-Gene 3D

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Data and tools Interoperability and standards Services Structural Bioinformatics

CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor.

FAIRsharing

Post author:Hannah Norman
Post published:February 10, 2021
Post category:Biochemistry Human Genomics Human Health Interoperability and standards Machine Learning Metabolomics Metagenomics Microbial Genetics Model Organism Biology Molecular Phylogenetics Pathogen Biology Plant Biology Proteomics Services Structural Bioinformatics Transcriptomics

A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies. FAIRsharing guides consumers to discover, select and use these resources with confidence, and producers to make their resource more discoverable, more widely adopted and cited.

PSIPRED

Phyre2

LIPID MAPS

Jalview

DRASP: Dundee Resource for Sequence Analysis and Structure Prediction

CATH-Gene 3D

FAIRsharing

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